Function reference
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actigraphy_df_to_SummarizedExperiment() - Convert Actigraphy data.frame to a SummarizedExperiment
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calculate_activity_counts()calculate_ac()calculate_measures()calculate_ai()calculate_activity_index()calculate_flags()calculate_n_idle()calculate_enmo()calculate_ai_defined()calculate_mad()get_sample_rate()calculate_auc()calculate_fast_mims()calculate_mims() - Calculate Summary Measures from Raw Accelerometer Data
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estimate_calibration_values()calibrate() - Calibrate Accelerometer Data using GGIR
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ensure_header_timestamp() - Ensure `HEADER_TIME_STAMP` is in
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fix_zeros()idle_na_locf() - Fix Zeros from Idle Sleep Mode
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flag_qc()flag_qc_all() - Flag Quality Control Values
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flag_spike()flag_interval_jump()flag_spike_second()flag_device_limit()flag_contiguous_device_limit()flag_same_value()flag_all_zero()flag_impossible() - Flag Spikes
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get_dynamic_range() - Get Dynamic Range
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get_transformations()set_transformations() - Get Transformations
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ggir_process() - Run GGIR Processing
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mark_condition() - Mark a Condition of a Specified Minimum Length
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mims_default_extrapolation()mims_default_interpolation()mims_default_filtering() - Default MIMS worker functions
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mims_default_processing() - Default MIMS Pre-processing
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read_acc_csv()extract_acc_header() - Read ActiGraph Accelerometer CSV
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read_actigraphy() - Read Actigraphy File
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summarize_daily_actigraphy()summarise_daily_actigraphy()summarize_actigraphy()collapse_daily_actigraphy()summarise_actigraphy() - Summarize Actigraphy Data
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tidy_axes() - Tidy axes to a long format
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write_acc_csv() - Write ActiGraph-like Accelerometer CSV