SPM12 Realign (Estimate and Reslice) — spm12

Performs SPM12 realignment estimation and reslicing on an Image

spm12_realign.deprecated(
  filename,
  fwhm = 5,
  register_to = c("first", "mean"),
  reslice = c("all", "2:n", "all+mean", "mean"),
  prefix = "r",
  add_spm_dir = TRUE,
  spmdir = spm_dir(verbose = verbose, install_dir = install_dir),
  clean = TRUE,
  verbose = TRUE,
  outdir = NULL,
  install_dir = NULL,
  ...
)

Arguments

filename	Files to be realigned and resliced
fwhm	Full-Width Half Max to smooth
register_to	Should the files be registered to the first or the mean
reslice	Options for reslicing all - all images in filename, 2:n - all images in filename 2:length(filename), all+mean - all images and the mean, mean - mean only
prefix	Prefix to append to front of image filename
add_spm_dir	Add SPM12 directory from this package
spmdir	SPM dir to add, will use package default directory
clean	Remove scripts from temporary directory after running
verbose	Print diagnostic messages
outdir	Directory to copy results. If full filename given, then results will be in `dirname(filename)`
install_dir	directory to download SPM12
...	Arguments passed to `run_spm12_script`

Value

Result from run_matlab_script