spm12_normalize_est.RdEstimate SPM12 (Spatial) Normalization from image
spm12_normalize_est( filename, biasreg = 0.001, biasfwhm = 60, regularization = c(0, 0.001, 0.5, 0.05, 0.2), affine = c("mni", "eastern", "subj", "none", ""), smoothness = 0, sampling_distance = 3, add_spm_dir = TRUE, spmdir = spm_dir(verbose = verbose, install_dir = install_dir), clean = TRUE, verbose = TRUE, install_dir = NULL, ... )
| filename | File to be normalized to the template |
|---|---|
| biasreg | Amount of bias regularization |
| biasfwhm | FWHM of Gaussian smoothness of bias. |
| regularization | parameters for warping regularization |
| affine | Space to register the image to, using an affine registration |
| smoothness | FWHM of smoothing done |
| sampling_distance | amount of smoothing of the warping field. This is used to derive a fudge factor to account for correlations between neighbouring voxels. Smoother data have more |
| add_spm_dir | Add SPM12 directory from this package |
| spmdir | SPM dir to add, will use package default directory |
| clean | Remove scripts from temporary directory after running |
| verbose | Print diagnostic messages |
| install_dir | directory to download SPM12 |
| ... | Arguments passed to |
Result from run_matlab_script