Neuroconductor

Guides for Developers

1. Preparing Your Package for Submission
2. Changes to your Package

Frequently Asked Questions (FAQ)

Please visit the FAQ for information on how to begin.

Installation Guides

1. Using the Windows Subsystem for Linux
2. Installing devtools
3. Installing ANTsR

Required/General Readings

1. NIfTI Basics
2. Viewing Data: Linked Viewers
3. Resampling Images

Data

1. Downloading Human Connectome Project Data
2. Downloading Functional Connectomes Projects

General Tutorials

Structural Imaging

1. Brain Extraction
2. Brain Extraction for CT
3. Tissue-Class Segmentation
4. Labeling Brain Structures
5. Processing Within-Visit Structural MRI
6. Hemorrhagic Stroke Segmentation in CT
7. Cortical Thickness Estimation (NOT DONE)

fMRI

4. Resting-State fMRI analysis using ANTsR
5. Resting-State fMRI analysis using fslr
6. Resting-State fMRI analysis using spm12r

DTI

7. DTI analysis with fslr
8. DTI analysis with Camino
9. DTI analysis with Camino with HCP data

Disease-specific Tutorials

1. Multiple Sclerosis Lesion Segmentation