Mid-Sagittal Plane Alignment — mid_sagittal

This function takes in an image, flips the image over the left/right plane, registers that flipped image to the original image, then applies the half transformation

mid_sagittal_align(
  file,
  outfile = NULL,
  retimg = TRUE,
  opts = "",
  translation = TRUE,
  force_rpi = TRUE,
  verbose = TRUE
)

Arguments

file: (character) input filename or class nifti
outfile: (character) output filename
retimg: (logical) return image of class nifti
opts: (character) options passed to flirt
translation: (logical) should the translation parameters be preserved (TRUE) or set to zero (FALSE)
force_rpi: Should rpi_orient_file be run?
verbose: (logical) print diagnostic messages

Value

Filename of output or nifti depending on retimg