FSL Stats

This function calls fslstats

fslstats(file, opts = "", verbose = TRUE, ts = FALSE, ...)

Arguments

file

(character) filename of image to be checked

opts

(character) operation passed to fslstats

verbose

(logical) print out command before running

ts

(logical) is the series a timeseries (4D), invoking -t option

...

options passed to checkimg

Value

Result of fslstats command

Examples

if (have.fsl()){
system.time({
x = array(rnorm(1e6), dim = c(100, 100, 100))
img = nifti(x, dim= c(100, 100, 100), 
datatype = convert.datatype()$FLOAT32, cal.min = min(x), 
cal.max = max(x), pixdim = rep(1, 4))
entropy = fslstats(img, opts='-E')
})
}  
#> fslstats  "/private/var/folders/1s/wrtqcpxn685_zk570bnx9_rr0000gr/T/RtmpKzob0N/file85752b99fa7d.nii.gz" -E
#>    user  system elapsed 
#>   0.514   0.024   0.540