FSL Robust Field of View — fslrobustfov • fslr

This function calls robustfov to automatically crop the image

fslrobustfov(
  file,
  brain_size = NULL,
  mat_name = NULL,
  roi_name = NULL,
  retimg = TRUE,
  reorient = FALSE,
  intern = FALSE,
  verbose = TRUE,
  ...
)

fsl_robustfov(retimg = FALSE, ...)

Arguments

file: (character) image to be manipulated
brain_size: size of brain in z-dimension (default 150mm)
mat_name: matrix output name
roi_name: ROI volume output name
retimg: (logical) return image of class nifti
reorient: (logical) If retimg, should file be reoriented when read in? Passed to readnii.
intern: (logical) to be passed to system
verbose: (logical) print out command before running
...: additional arguments passed to readnii.

Value

If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.