FSL Copy Geometry — fslcpgeom • fslr

This function calls fslcpgeom

fslcpgeom(
  file,
  file_with_header,
  retimg = TRUE,
  reorient = FALSE,
  intern = FALSE,
  opts = "",
  verbose = TRUE,
  ...
)

Arguments

file: (character) image to be manipulated
file_with_header: image with header to be copied over
retimg: (logical) return image of class nifti
reorient: (logical) If retimg, should file be reoriented when read in? Passed to readnii.
intern: (logical) to be passed to system
opts: (character) operations to be passed to fslmaths
verbose: (logical) print out command before running
...: additional arguments passed to readnii.

If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.